PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_008464
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family YABBY
Protein Properties Length: 232aa    MW: 25384.6 Da    PI: 7.8663
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_008464genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY216.96.2e-67221905169
        YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvekeesasts.vs 97 
                  ssseq+Cyv+Cn C+t+lavsvP +slfk+vtvrCGhC++ll  n++      aa ++l+           +++  +e +n+    ++++ a ++  +
  DCAR_008464  22 SSSEQLCYVHCNICDTVLAVSVPCSSLFKTVTVRCGHCSNLLPANMRGLLLPAAAPDQLQFPHSFFfppsTHHNFLDEIRNTAPDLVSNQLAISDfSP 119
                  689*********************************************99999999998753221122346666656655555555444444444044 PP

        YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                  s+ +     +e pr+p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafs+aaknWahfP+i fg
  DCAR_008464 120 SSGIGL-GFDEHPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSTAAKNWAHFPHIQFG 190
                  444444.45677999********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.8E-6723190IPR006780YABBY protein
SuperFamilySSF470958.38E-8135185IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-4140184IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MFSPNSNSPS VPSSLNHHLP SSSSEQLCYV HCNICDTVLA VSVPCSSLFK TVTVRCGHCS  60
NLLPANMRGL LLPAAAPDQL QFPHSFFFPP STHHNFLDEI RNTAPDLVSN QLAISDFSPS  120
SGIGLGFDEH PRPPAINRPP EKRQRVPSAY NRFIKDEIQR IKAGNPDISH REAFSTAAKN  180
WAHFPHIQFG INLMHSDQAT FKKTTATSTV RQQGNADDTT LAKDCFPTPA I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582967.11e-89PREDICTED: protein YABBY 4
SwissprotQ0JBF03e-66YAB5_ORYSJ; Protein YABBY 5
SwissprotQ01JG23e-66YAB5_ORYSI; Protein YABBY 5
TrEMBLB9T2V42e-89B9T2V4_RICCO; Axial regulator YABBY1, putative
STRINGVIT_02s0154g00070.t017e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-57YABBY family protein